The existing junior section of the club was formed in 1997 with an U9s team who played in the North Hants Youth League. Until the 2005/06 season, the club operated under the loose umbrella of the Worthies Sports and Social Club. Within this all teams were run independently with separate funding, management and coaching.
There was co-operation between teams with players' kit, management of pitches, child protection and presentation evenings, but no formal structure existed. In January 2006, the Worthys Youth Football Club was established. The committee comprised coaches only, with Andy Court presiding as chairman, ably assisted for many years thereafter by Mike Bridge, Peter Wooldridge, Tim Beanland and Richard Allerston.