The existing junior section of the club was formed in 1997 with an U9s team who played in the North Hants Youth League. Until the 2005/06 season, the club operated under the loose umbrella of the Worthies Sports and Social Club. Within this all teams were run independently with separate funding, management and coaching.
There was co-operation between teams with players' kit, management of pitches, child protection and presentation evenings, but no formal structure existed. In January 2006, the Worthys Youth Football Club was established.